PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00047g02450.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 406aa    MW: 43504.4 Da    PI: 6.5048
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00047g02450.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.8e-0633441425
                              --TTTTT-SS-S CS
                   zf-CCCH 14 tCkyGdrCkFaH 25
                               C+yGdrCkF H
  Peaxi162Scf00047g02450.1 33 NCQYGDRCKFLH 44
                              5*********** PP

Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MVLPVAEPGI EHSEEDLPQH QGCVLSMPPV YINCQYGDRC KFLHAAQQQP KQNPFGFGGQ  60
NTNFQNTNAQ QPRSNPFGNV QSNSQPGANP FGFGVQSNSQ PRGANNSGLT QNQYKPFENK  120
WTRAASTNSS PLRQSDNQPV APNHTCTDSD SCKRQIVEDF NNEKPLWILT CYGHRKSGPC  180
DITGDISYEE LRAAAYDDAK RGQSLMSIVE RERSLLNSKA AEFENLLRNP YVAPSSSAPN  240
AQSPFPGATP SAALSVQNSS PPSASSFSQL GALLNTGATP PPTNTFGQLS PLGNSVQTSS  300
SSGPNTFSFG NTSGSFGFGS QATSQPFQNA FTPSNISASS ERNPFSTSTT SHHFPNPSGS  360
QVSTQVHFPA SVAVSPVSIN LTSGAEKEEF SGDNSIWTKK EWKIGE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8987751e-139AB898775.1 Nicotiana benthamiana NbCG1b mRNA for nuclear pore complex protein CG1b, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798981.11e-178PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1
RefseqXP_016497476.11e-178PREDICTED: zinc finger CCCH domain-containing protein 16-like isoform X1
TrEMBLW6JJD11e-179W6JJD1_NICBE; Nuclear pore complex protein CG1b
STRINGPGSC0003DMT4000075021e-175(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94392022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.13e-51C3H family protein